image_processing.jpg

Image processing for 3D-EM.

Software:

1. AMIRA2021 machine learning module for Volume SEM
2. ilastik (in preparation)
3. Inspect 3D for tomography
4. IMOD for tomography
5. RELION for single-particle analysis & 3D model

MRC-TU Cryo-EM GPU Server (since 2018)

CPU: Intel Xeon E5-2690V4 - 2.6 GHz - 14-core

GPU: Nvidia GTX 1080Ti x 4 cards

RAM: 4x32GB DDR4

SSD: 512GB SSD & 1TB SSD

HDD: 6x8TB Enterprise grade HDD

Dell Precision 3640 Tower Workstation (since 2021)

CPU: Intel Core i9 (10th Gen) 10900K - 3.7 GHZ (5.3 GHz) - 10-core

GPU: NVIDIA Quadro RTX 4000, 3DP Virtual Link

RAM: 32GB 

SSD: 512MB

HDD: 8TB 7200rpm SATA Enterprise

Display: Wacom Cintiq 27 QHD touch

Apple Mac Pro (since 2015)